EMBOSS explorer


Selects optimal model for Maximum Likelihood phylogenetic tree from multiple alignment (read the manual)

Unshaded fields are optional and can safely be ignored. (hide optional fields)

Input section

Select an input sequence. Use one of the following three fields:

  1. To access a sequence from a database, enter the USA here:
  2. To upload a sequence from your local computer, select it here:
  3. To enter the sequence data manually, type here:
Additional section
Number of substitution rate categories
Run PhyML on data using selected model?
Criterion for selecting model used by PhyML
PhyML method for estimating support of branches
Number of trials for bootstrap
PhyML tree topology search method
Let PhyML restart tree topology search with randomized trees?
Number of random restarts
Output section
Base name for output files
Open PhyML treefile using NJplot (not for WWW interface)?
Run section
Email address: If you are submitting a long job and would like to be informed by email when it finishes, enter your email address here.